Humanities
Skip to main content Skip to main navigation menu Skip to site footer
  • Register
  • Login
  • Menu
  • Home
  • Current
  • Archives
  • Announcements
  • About
    • About the Journal
    • Submissions
    • Editorial Team
    • Privacy Statement
    • Contact
  • Register
  • Login

Journal of Education, Health and Sport

Melancholy in the Microbiome: Decoding the Gut-Brain Axis in Major Depression – A Systematic Review
  • Home
  • /
  • Melancholy in the Microbiome: Decoding the Gut-Brain Axis in Major Depression – A Systematic Review
  1. Home /
  2. Archives /
  3. Vol. 95 (2026) /
  4. Medical Sciences

Melancholy in the Microbiome: Decoding the Gut-Brain Axis in Major Depression – A Systematic Review

Authors

  • Kalina Światlak Medical University of Silesia in Katowice https://orcid.org/0009-0007-9406-6519
  • Wiktoria Żelazna Medical University of Silesia, 40-055 Katowice, Poland https://orcid.org/0009-0001-8185-4846
  • Justyna Trzaskalik Medical University of Silesia, 40-055 Katowice, Poland https://orcid.org/0009-0006-8466-0402

DOI:

https://doi.org/10.12775/JEHS.2026.95.74083

Keywords

Major Depressive Disorder, Microbiota-Gut-Brain Axis, Tryptophan-Kynurenine Pathway, Dysbiosis, Neuroinflammation

Abstract

Background. Major Depressive Disorder (MDD) is a debilitating affective condition that is increasingly recognized as a systemic disease driven by the Microbiota-Gut-Brain Axis (MGBA).

 

Aim. This systematic review aimed to summarize and identify common ground among current findings regarding the correlation between pathological microbiome growth and the development of MDD. 

 

Material and methods. A systematic literature search was conducted in the PubMed and Scopus electronic databases to identify clinical studies evaluating gut microbiota composition in adult patients (aged 18–65) with Major Depressive Disorder (MDD). Applying strict PICOS eligibility criteria, a three-person independent screening process was performed following PRISMA guidelines. From the initial 915 identified records, a final cohort of 66 unique publications was selected for multi-omics synthesis. Extracted data parameters included clinical psychometric scores (BDI, HAM-D), microbial metabolite profiles, and specific alpha- and beta-diversity metrics.

 

Results.  The synthesis of the 66 studies highlighted a clear pathobiological cascade, where the depletion of protective strains (Faecalibacterium and Roseburia) and overgrowth of pathobionts (Klebsiella and Ruminococcus) compromised intestinal barrier integrity. This "leaky gut" triggers a systemic influx of LPS and cytokines (IL-1β, IL-6, TNF-α), which cross the blood-brain barrier and enter the brain. This molecular synergy exacerbates both depressive severity and gastrointestinal comorbidities (IBS/IBD). 

 

Conclusions. MDD-associated dysbiosis drives neuroinflammation via the gut–brain axis, as conceptualized in the NIMETOX framework. Translating these findings into personalized microbiome-targeted therapies requires standardization of methodologies, accounting for antidepressant confounders, and integration of multi-omic research.

References

GBD 2019 Mental Disorders Collaborators. Global, regional, and national burden of 12 mental disorders in 204 countries and territories, 1990-2019: a systematic analysis for the Global Burden of Disease Study 2019. Lancet Psychiatry. 2022 Feb;9(2):137-150. https://doi.org/10.1016/S2215-0366(21)00395-3. PMID: 35026139; PMCID: PMC8776563.

Herrman H, Patel V, Kieling C, Berk M, Buchweitz C, Cuijpers P, Furukawa TA, Kessler RC, Kohrt BA, Maj M, McGorry P, Reynolds CF 3rd, Weissman MM, Chibanda D, Dowrick C, Howard LM, Hunkeler EM, Jenkins R, Jha V, McDaid D, Minas H, Ndetei D, Thornicroft G, Tomlinson M. Time for united action on depression: a Lancet-World Psychiatric Association Commission. Lancet. 2022 Mar 5;399(10328):957-1022. https://doi.org/10.1016/S0140-6736(21)02141-3. PMID: 35180424.

Boku S, Inagaki S, Takahashi S, Onishi S. Evidence-based hypotheses of mega-trends in the pathophysiology of depression: From the monoamine hypothesis to the neuroinflammation hypothesis. Neuropsychopharmacol Rep. 2021 Dec;41(4):460-474. https://doi.org/10.1002/npr2.12194. PMID: 34387063; PMCID: PMC8653920.

Zhou X, Wang S, Wang X, Chen X, Zhou P, Ma K, Zhang P. Mechanisms of the effect of gut microbes on depression through the microbiota-gut-brain axis. Front Nutr. 2025 Aug 6;12:1634548. https://doi.org/10.3389/fnut.2025.1634548 PMID: 40843192; PMCID: PMC12364656.

Ge Z, Hu Y, Kan W, Li L, Xu J, Zhang Y, Zheng N, Wang G and Du J (2025) Lipid metabolic dysregulation-induced neuroinflammation in the pathophysiology of major depressive disorder. Front. Immunol. 16:1625087. https://doi.org/10.3389/fimmu.2025.1625087

Hwang YK, Oh JS. Interaction of the Vagus Nerve and Serotonin in the Gut-Brain Axis. Int J Mol Sci. 2025 Jan 29;26(3):1160.https://doi.org/10.3390/ijms26031160

PMID: 39940928; PMCID: PMC11818468.

Zhu Z, Cheng Y, Liu X, Xu X, Ding W, Ling Z, Liu J and Cai G (2025) The microbiota-gut-brain axis in depression: unraveling the relationships and therapeutic opportunities. Front. Immunol. 16:1644160 https://doi.org/10.3389/fimmu.2025.1644160

Zhou X, Wang S, Wang X, Chen X, Zhou P, Ma K and Zhang P (2025) Mechanisms of the effect of gut microbes on depression through the microbiota-gut-brain axis. Front. Nutr. 12:1634548. https://doi.org/10.3389/fnut.2025.1634548

Jia M, Fan Y, Ma Q, Yang D, Wang Y, He X, Zhao B, Zhan X, Qi Z, Ren Y, Dong Z, Zhu F, Wang W, Gao Y, Ma X. Gut microbiota dysbiosis promotes cognitive impairment via bile acid metabolism in major depressive disorder. Transl Psychiatry. 2024 Dec 24;14(1):503. https://doi.org/10.1038/s41398-024-03211-4 . PMID: 39719433; PMCID: PMC11668851.

Hernández-Cacho A, García-Gavilán JF, Atzeni A, Konstanti P, Belzer C, Vioque J, Corella D, Fitó M, Vidal J, Mela V, Liang L, Torres-Collado L, Coltell O, Babio N, Clish C, Hernando-Redondo J, Martínez-González MÁ, Wang F, Moreno-Indias I, Ni J, Dennis C, Ruiz-Canela M, Tinahones FJ, Hu FB, Salas-Salvadó J. Multi-omics approach identifies gut microbiota variations associated with depression. NPJ Biofilms Microbiomes. 2025 Apr 28;11(1):68. https://doi.org/10.1038/s41522-025-00707-9 PMID: 40295565; PMCID: PMC12038053.

Liu Q, Fang W, Zheng P, Xie S, Jiang X, Luo W, Han L, Zhao L, Lu L, Zhai L, Yu DJ, Yang W, Lin C, Fang X, Bian Z. Multi-kingdom microbiota analysis reveals bacteria-viral interplay in IBS with depression and anxiety. NPJ Biofilms Microbiomes. 2025 Jul 5;11(1):129. https://doi.org/10.1038/s41522-025-00760-4 PMID: 40617850; PMCID: PMC12228763.

Wang Z, Zhou M, Dang Y, Huang X, Xu C, Xu F, Xu X, Li P, Zhang S, Shi H, Wu J. Fecal microbiota composition and function are associated with anxiety and depression in patients with inflammatory bowel disease. PLoS One. 2025 Dec 19;20(12):e0337941.https://doi.org/10.1371/journal.pone.0337941 PMID: 41417758; PMCID: PMC12716764.

Zhao M, Liu P, Pan M, Guo Y, Sun T, Ren Z, Zheng X, Li M, Chao X, Wang J, Zeng J, Liu X, Yang Y, Luo P, Zheng D, Kuang J, Ding K, Zhao A, Ge K, Ouyang Y, Xie G, Liu P, Wang C, Chen T, Zhang T, Sun N, Jia W. Microbiota-metabolome interplay in depression: Metabolic insights and diagnostic potential. Cell Rep Med. 2026 Jan 20;7(1):102574. https://doi.org/10.1016/j.xcrm.2025.102574 PMID: 41564867; PMCID: PMC12866080.

Zhang Q, Yun Y, An H, Zhao W, Ma T, Wang Z, Yang F. Gut Microbiome Composition Associated With Major Depressive Disorder and Sleep Quality. Front Psychiatry. 2021 May 21;12:645045.

https://doi.org/10.3389/fpsyt.2021.645045 PMID: 34093266; PMCID: PMC8175648.

Yuan X, Chen B, Duan Z, Xia Z, Ding Y, Chen T, Liu H, Wang B, Yang B, Wang X, Liu S, Zhou JY, Liu Y, Wang Q, Shen Z, Xiao J, Shang H, Liu W, Shi G, Zhu L, Chen Y. Depression and anxiety in patients with active ulcerative colitis: crosstalk of gut microbiota, metabolomics and proteomics. Gut Microbes. 2021 Jan-Dec;13(1):1987779. https://doi.org/10.1080/19490976.2021.1987779 PMID: 34806521; PMCID: PMC8632339.

Kovtun AS, Averina OV, Angelova IY, Yunes RA, Zorkina YA, Morozova AY, Pavlichenko AV, Syunyakov TS, Karpenko OA, Kostyuk GP, Danilenko VN. Alterations of the Composition and Neurometabolic Profile of Human Gut Microbiota in Major Depressive Disorder. Biomedicines. 2022 Sep 2;10(9):2162. https://doi.org/10.3390/biomedicines10092162 PMID: 36140263; PMCID: PMC9496097.

Xie Z, Huang J, Sun G, He S, Luo Z, Zhang L, Li L, Yao M, Du C, Yu W, Feng Y, Yang D, Zhang J, Ge C, Li H, Geng M. Integrated multi-omics analysis reveals gut microbiota dysbiosis and systemic disturbance in major depressive disorder. Psychiatry Res. 2024 Apr;334:115804. https://doi.org/10.1016/j.psychres.2024.115804 Epub 2024 Feb 18. PMID: 38417224

Dong Z, Shen X, Hao Y, Li J, Li H, Xu H, Yin L, Kuang W. Gut Microbiome: A Potential Indicator for Differential Diagnosis of Major Depressive Disorder and General Anxiety Disorder. Front Psychiatry. 2021 Sep 13;12:651536. https://doi.org/10.3389/fpsyt.2021.651536 PMID: 34589003; PMCID: PMC8473618

Yang Y, Mori M, Wai KM, Jiang T, Sugimura Y, Munakata W, Mikami T, Murashita K, Nakaji S, Ihara K. The Association between Gut Microbiota and Depression in the Japanese Population. Microorganisms. 2023 Sep 11;11(9):2286. https://doi.org/10.3390/microorganisms11092286 PMID: 37764129; PMCID: PMC10534301

Huang Y, Shi X, Li Z, Shen Y, Shi X, Wang L, Li G, Yuan Y, Wang J, Zhang Y, Zhao L, Zhang M, Kang Y, Liang Y. Possible association of Firmicutes in the gut microbiota of patients with major depressive disorder. Neuropsychiatr Dis Treat. 2018 Dec 3;14:3329-3337. https://doi.org/10.2147/NDT.S188340 PMID: 30584306; PMCID: PMC6284853

Aizawa E, Tsuji H, Asahara T, Takahashi T, Teraishi T, Yoshida S, Ota M, Koga N, Hattori K, Kunugi H. Possible association of Bifidobacterium and Lactobacillus in the gut microbiota of patients with major depressive disorder. J Affect Disord. 2016 Sep 15;202:254-7. https://doi.org/10.1016/j.jad.2016.05.038 Epub 2016 May 24. PMID: 27288567

Liu RT, Rowan-Nash AD, Sheehan AE, Walsh RFL, Sanzari CM, Korry BJ, Belenky P. Reductions in anti-inflammatory gut bacteria are associated with depression in a sample of young adults. Brain Behav Immun. 2020 Aug;88:308-324. https://doi.org/10.1016/j.bbi.2020.03.026 Epub 2020 Mar 27. PMID: 32229219; PMCID: PMC7415740

Zhang X, Hou Y, Li Y, Wei W, Cai X, Shao H, Yuan Y, Zheng X. Taxonomic and Metabolic Signatures of Gut Microbiota for Assessing the Severity of Depression and Anxiety in Major Depressive Disorder Patients. Neuroscience. 2022 Aug 1;496:179-189. https://doi.org/10.1016/j.neuroscience.2022.06.024 Epub 2022 Jun 21. PMID: 35750110

Chen JJ, He S, Fang L, Wang B, Bai SJ, Xie J, Zhou CJ, Wang W, Xie P. Age-specific differential changes on gut microbiota composition in patients with major depressive disorder. Aging (Albany NY). 2020 Feb 10;12(3):2764-2776. https://doi.org/10.18632/aging.102775 Epub 2020 Feb 10. PMID: 32040443; PMCID: PMC7041727

Maes M, Almulla AF, Vasupanrajit A, Jirakran K, Tunvirachaisakul C, Maes A, Chanchaem P, Klomkliew P, Payungporn S, Zhang Y. Functional shotgun metagenomic insights into gut microbial pathway and enzyme disruptions linking metabolism, affect, cognition, and suicidal ideation in major depressive disorder. Acta Neuropsychiatr. 2026 Jan 23;38:e16. https://doi.org/10.1017/neu.2026.10056 PMID: 41572438; PMCID: PMC13130273

Park S, Li C, Wu X, Zhang T. Gut Microbiota Alterations and Their Functional Differences in Depression According to Enterotypes in Asian Individuals. Int J Mol Sci. 2023 Aug 28;24(17):13329. https://doi.org/10.3390/ijms241713329 PMID: 37686135; PMCID: PMC10487633

Zhong Q, Chen JJ, Wang Y, Shao WH, Zhou CJ, Xie P. Differential Gut Microbiota Compositions Related With the Severity of Major Depressive Disorder. Front Cell Infect Microbiol. 2022 Jul 11;12:907239. https://doi.org/10.3389/fcimb.2022.907239 PMID: 35899051; PMCID: PMC9309346

Hu X, Li Y, Wu J, Zhang H, Huang Y, Tan X, Wen L, Zhou X, Xie P, Olasunkanmi OI, Zhou J, Sun Z, Liu M, Zhang G, Yang J, Zheng P, Xie P. Changes of gut microbiota reflect the severity of major depressive disorder: a cross sectional study. Transl Psychiatry. 2023 Apr 28;13(1):137. https://doi.org/10.1038/s41398-023-02436-z PMID: 37117202; PMCID: PMC10147706

Xie P, Zhou X, Li Y, Wu J, Zhang H, Huang Y, Tan X, Wen L, Olasunkanmi OI, Zhou J, Sun Z, Liu M, Zhang G, Wang Y, Xie P, Yang J, Zheng P. Gut microbial CAZymes markers for depression. Transl Psychiatry. 2024 Mar 5;14(1):135. https://doi.org/10.1038/s41398-024-02850-x.PMID: 38443364; PMCID: PMC10914822

Chen S, Zhu B, Lu X, Huang Y, Wang S, Wang W, Chen G, Wu X, Zhou J, Wu F, Wu K. Integrative multi-kingdom gut microbiome analysis uncovers clinical signatures of major depressive disorder. J Affect Disord. 2026 Sep 1;408:121858. https://doi.org/10.1016/j.jad.2026.121858 Epub 2026 Apr 24. PMID: 42035799

Wang X, Cao D, Zhang H, Chen W, Sun J, Hu H. Utilizing metagenomic profiling and machine learning model to identify bacterial biomarkers for major depressive disorder. Front Psychiatry. 2025 Feb 18;16:1539596. https://doi.org/10.3389/fpsyt.2025.1539596 PMID: 40041700; PMCID: PMC11876151.

Bai S, Xie J, Bai H, Tian T, Zou T, Chen JJ. Gut Microbiota-Derived Inflammation-Related Serum Metabolites as Potential Biomarkers for Major Depressive Disorder. J Inflamm Res. 2021 Aug 6;14:3755-3766. https://doi.org/10.2147/JIR.S324922 PMID: 34393496; PMCID: PMC8354734

Averina OV, Zorkina YA, Yunes RA, Kovtun AS, Ushakova VM, Morozova AY, Kostyuk GP, Danilenko VN, Chekhonin VP. Bacterial Metabolites of Human Gut Microbiota Correlating with Depression. Int J Mol Sci. 2020 Dec 3;21(23):9234. https://doi.org/10.3390/ijms21239234 PMID: 33287416; PMCID: PMC7730936

Guo F, Jing L, Xu Y, Zhang K, Li Y, Sun N, Liu P, Zhang H. Gut microbiota and inflammatory factor characteristics in major depressive disorder patients with anorexia. BMC Psychiatry. 2024 May 2;24(1):334 .https://doi.org/10.1186/s12888-024-05778-0. PMID: 38698338; PMCID: PMC11067108.

Song X, Zhong Q, Zhang R, Lai S, Wu Y, Yin J, Liu Y, Sun J, Zhang J, Lu X, Liu S, Zhong S, Jia Y. A new perspective on cognitive impairment in major depressive disorder: Changes in gut microbiota and their inflammatory regulatory mechanisms. J Affect Disord. 2025 Nov 15;389:119648. https://doi.org/10.1016/j.jad.2025.119648 Epub 2025 Jun 8. PMID: 40494496

Mora-Martínez C, Molina-Mendoza G, Cenit MC, Medina-Rodríguez EM, Larroya-García A, Sanchez-Carro Y, Gonzalez-Blanco L, Bobes J, Lopez-Garcia P, Zandio-Zorrilla M, Lahortiga-Ramos F, Gili M, Garcia-Toro M, Barcelo B, Ibarra O, Sanz Y. Gut microbiome signatures associated with depression and obesity. mSystems. 2026 Mar 24;11(3):e0126325. https://doi.org/10.1128/msystems.01263-25 Epub 2026 Jan 30. PMID: 41615149; PMCID: PMC13011431

Liu P, Jing L, Guo F, Xu Y, Cheng J, Liu S, Liu L, Liu Z, Zhang K, Sun N. Characteristics of gut microbiota and its correlation with hs-CRP and somatic symptoms in first-episode treatment-naive major depressive disorder. J Affect Disord. 2024 Jul 1;356:664-671. https://doi.org/10.1016/j.jad.2024.04.011 Epub 2024 Apr 12. PMID: 38615845

From the American Association of Neurological Surgeons (AANS), American Society of Neuroradiology (ASNR), Cardiovascular and Interventional Radiology Society of Europe (CIRSE), Canadian Interventional Radiology Association (CIRA), Congress of Neurological Surgeons (CNS), European Society of Minimally Invasive Neurological Therapy (ESMINT), European Society of Neuroradiology (ESNR), European Stroke Organization (ESO), Society for Cardiovascular Angiography and Interventions (SCAI), Society of Interventional Radiology (SIR), Society of NeuroInterventional Surgery (SNIS), and World Stroke Organization (WSO); Sacks D, Baxter B, Campbell BCV, Carpenter JS, Cognard C, Dippel D, Eesa M, Fischer U, Hausegger K, Hirsch JA, Shazam Hussain M, Jansen O, Jayaraman MV, Khalessi AA, Kluck BW, Lavine S, Meyers PM, Ramee S, Rüfenacht DA, Schirmer CM, Vorwerk D. Multisociety Consensus Quality Improvement Revised Consensus Statement for Endovascular Therapy of Acute Ischemic Stroke. Int J Stroke. 2018 Aug;13(6):612-632. https://doi.org/10.1177/1747493018778713 Epub 2018 May 22. PMID: 29786478

Wang D, Jiang X, Zhu H, Zhou Y, Jia L, Sun Q, Kong L, Tang Y. Relationships between the gut microbiome and brain functional alterations in first-episode, drug-naïve patients with major depressive disorder. J Affect Disord. 2024 Oct 1;362:578-584. https://doi.org/10.1016/j.jad.2024.07.013 Epub 2024 Jul 6. PMID: 38972643

Zheng S, Zhu Y, Wu W, Zhang Q, Wang Y, Wang Z, Yang F. A correlation study of intestinal microflora and first-episode depression in Chinese patients and healthy volunteers. Brain Behav. 2021 Aug;11(8):e02036. https://doi.org/10.1002/brb3.2036 Epub 2021 May 7. PMID: 33960717; PMCID: PMC8413750

Caso JR, MacDowell KS, González-Pinto A, García S, de Diego-Adeliño J, Carceller-Sindreu M, Sarramea F, Caballero-Villarraso J, Gracia-García P, De la Cámara C, Agüera L, Gómez-Lus ML, Alba C, Rodríguez JM, Leza JC. Gut microbiota, innate immune pathways, and inflammatory control mechanisms in patients with major depressive disorder. Transl Psychiatry. 2021 Dec 21;11(1):645. https://doi.org/10.1038/s41398-021-01755-3 PMID: 34934041; PMCID: PMC8692500

Bai S, Bai H, Li D, Zhong Q, Xie J, Chen JJ. Gut Microbiota-Related Inflammation Factors as a Potential Biomarker for Diagnosing Major Depressive Disorder. Front Cell Infect Microbiol. 2022 Mar 15;12:831186. https://doi.org/10.3389/fcimb.2022.831186 PMID: 35372107; PMCID: PMC8965553

Du J-Y, Zhang Z-J, Tan L, Yang J-Y, Yang R-N, Chen Y-L, Tan G-F, Li J, Li W-J, Yang L, Cai J, Shen D-L, Zhu H-R, Fan Z-X, Yuan M-L, Zhang W. Gut microbiota dysbiosis and metabolic perturbations of bile/glyceric acids in major depressive disorder with IBS comorbidity. mBio. 2025 Nov 12;16(11):e0244725. https://doi.org/10.1128/mbio.02447-25 Epub 2025 Oct 7. PMID: 41055380; PMCID: PMC12607870

Du J-Y, Zhang Z-J, Tan L, Yang J-Y, Yang R-N, Chen Y-L, Tan G-F, Li J, Li W-J, Yang L, Cai J, Shen D-L, Zhu H-R, Fan Z-X, Yuan M-L, Zhang W. Gut microbiota dysbiosis and metabolic perturbations of bile/glyceric acids in major depressive disorder with IBS comorbidity. mBio. 2025 Nov 12;16(11):e0244725. https://doi.org/10.1128/mbio.02447-25 Epub 2025 Oct 7. PMID: 41055380; PMCID: PMC12607870

Kozhakhmetov S, Kossumov A, Zhakupova T, Polyakova T, Imambayeva N, Syzdykova B, Rakhmankulova A, Dalibayeva G, Kovenskiy A, Jarmukhanov Z, Issilbayeva A, Vinogradova E, Kushugulova A. Characterization of Gut Microbiome Composition in Depression and Completed Suicide. Int J Mol Sci. 2025 May 19;26(10):4880. https://doi.org/10.3390/ijms26104880 PMID: 40430019; PMCID: PMC12112742

Cussotto S, Colle R, Voican CS, Ciocan DM, Trainel N, Bottemanne H, Pelloux Y, David DJ, Cassard AM, Perlemuter G, Corruble E. The Gut Microbiota Is Altered in Antidepressant-Free Depressed Patients and Is Associated With Depression Severity. J Neurochem. 2025 Jul;169(7):e70173. https://doi.org/10.1111/jnc.70173 PMID: 40717539; PMCID: PMC12301870

Chung YE, Chen HC, Chou HL, Chen IM, Lee MS, Chuang LC, Liu YW, Lu ML, Chen CH, Wu CS, Huang MC, Liao SC, Ni YH, Lai MS, Shih WL, Kuo PH. Exploration of microbiota targets for major depressive disorder and mood related traits. J Psychiatr Res. 2019 Apr;111:74-82. https://doi.org/10.1016/j.jpsychires.2019.01.016 Epub 2019 Jan 19. PMID: 30685565

Hu K, Zhang T, Wang G, Zhang K. The characteristics of gut microbiota composition in patients with depression and relationship with clinical symptoms. Front Psychiatry. 2026 Mar 11;17:1790968. https://doi.org/10.3389/fpsyt.2026.1790968 PMID: 41890427; PMCID: PMC13013361

Zhao H, Jin K, Jiang C, Pan F, Wu J, Luan H, Zhao Z, Chen J, Mou T, Wang Z, Lu J, Lu S, Hu S, Xu Y, Huang M. A pilot exploration of multi-omics research of gut microbiome in major depressive disorders. Transl Psychiatry. 2022 Jan 10;12(1):8. https://doi.org/10.1038/s41398-021-01769-x PMID: 35013099; PMCID: PMC8748871

Zhang Q, Yun Y, An H, Zhao W, Ma T, Wang Z, Yang F. Gut microbiome and daytime function in Chinese patients with major depressive disorder. J Psychosom Res. 2022 Jun;157:110787. https://doi.org/10.1016/j.jpsychores.2022.110787 Epub 2022 Mar 22. PMID: 35344817

Arbabi F, Shapoury R, Haghi F, Zeighami H, Pirzeh R. Investigating the bacterial profiles of Lactobacillus, Bifidobacterium, Actinobacteria, Fusobacterium, Firmicutes, and Bacteroides in stool samples from patients with severe depression and healthy individuals. Psychoneuroendocrinology. 2024 Dec;170:107090. https://doi.org/10.1016/j.psyneuen.2024.107090 Epub 2024 Jul 14. PMID: 39217732

Müller B, Rasmusson AJ, Just D, Jayarathna S, Moazzami A, Novicic ZK, Cunningham JL. Fecal Short-Chain Fatty Acid Ratios as Related to Gastrointestinal and Depressive Symptoms in Young Adults. Psychosom Med. 2021 Sep 1;83(7):693-699. https://doi.org/10.1097/PSY.0000000000000965 PMID: 34267089; PMCID: PMC8428857

Zhang J, Yang H, Chen X, Xu L, Zhang X, Tang X. Altered serum 3β-hydroxy bile acids in major depressive disorder and associations with symptom dimensions. J Affect Disord. 2026 Aug 1;406:121688. https://doi.org/10.1016/j.jad.2026.121688 Epub 2026 Mar 25. PMID: 41895615

Amin N, Liu J, Bonnechere B, MahmoudianDehkordi S, Arnold M, Batra R, Chiou YJ, Fernandes M, Ikram MA, Kraaij R, Krumsiek J, Newby D, Nho K, Radjabzadeh D, Saykin AJ, Shi L, Sproviero W, Winchester L, Yang Y, Nevado-Holgado AJ, Kastenmüller G, Kaddurah-Daouk R, van Duijn CM. Interplay of Metabolome and Gut Microbiome in Individuals With Major Depressive Disorder vs Control Individuals. JAMA Psychiatry. 2023 Jun 1;80(6):597-609. https://doi.org/10.1001/jamapsychiatry.2023.0685

PMID: 37074710; PMCID: PMC10116384

Rafie Sedaghat F, Ghotaslou P, Ghotaslou R. Association between major depressive disorder and gut microbiota dysbiosis. Int J Psychiatry Med. 2024 Nov;59(6):702-710. https://doi.org/10.1177/00912174241266646 Epub 2024 Jul 22. PMID: 39039860

Liu S, Li Y, Shi Y, Rao Z, Zhang Y, Zhang Y, Wang T, Kong H, Zhu S, Zhu DM, Yu Y, Zhu J. Multi-omics analyses of the gut microbiome, fecal metabolome, and multimodal brain MRI reveal the role of Alistipesand its related metabolites in major depressive disorder. Psychol Med. 2025 Jul 7;55:e190. https://doi.org/10.1017/S003329172510072X. PMID: 40621717; PMCID: PMC12270276

Skonieczna-Żydecka K, Grochans E, Maciejewska D, Szkup M, Schneider-Matyka D, Jurczak A, Łoniewski I, Kaczmarczyk M, Marlicz W, Czerwińska-Rogowska M, Pełka-Wysiecka J, Dec K, Stachowska E. Faecal Short Chain Fatty Acids Profile is Changed in Polish Depressive Women. Nutrients. 2018 Dec 7;10(12):1939. https://doi.org/10.3390/nu10121939 PMID: 30544489; PMCID: PMC6316414.

Li X, Jing K, Lu H, Li K, Zhang Y, Hasichaolu. Exploring the Correlation between Changes in Gut Microbial Community Diversity and Depression in Human Populations. Biomed Res Int. 2022 Jul 29;2022:6334868. https://doi.org/10.1155/2022/6334868 PMID: 35937392; PMCID: PMC9355758

Yu S, Wang L, Jing X, Wang Y, An C. Features of gut microbiota and short-chain fatty acids in patients with first-episode depression and their relationship with the clinical symptoms. Front Psychol. 2023 Apr 24;14:1088268. https://doi.org/10.3389/fpsyg.2023.1088268 PMID: 37168424; PMCID: PMC10165121

Okuma K, Hatayama K, Tokuno H, Ebara A, Odachi A, Masuyama H, Hoshiko N, Tanaka N. A risk estimation method for depression based on the dysbiosis of intestinal microbiota in Japanese patients. Front Psychiatry. 2024 May 28;15:1382175. https://doi.org/10.3389/fpsyt.2024.1382175 PMID: 38863614; PMCID: PMC11165696

Chen JJ, Zheng P, Liu YY, Zhong XG, Wang HY, Guo YJ, Xie P. Sex differences in gut microbiota in patients with major depressive disorder. Neuropsychiatr Dis Treat. 2018 Feb 26;14:647-655. https://doi.org/10.2147/NDT.S159322 PMID: 29520144; PMCID: PMC5833751

Won S, Kim EJ, Park SE, Lee MH, Pak J, Kim K, Son HS, Kim JH, Kwak S. Exploring the Characteristics of Gut Microbiota Associated with Depression via the Depression Assessment Scales. J Microbiol Biotechnol. 2024 Nov 27;35:e2408042.https://doi.org/10.4014/jmb.2408.08042 PMID: 39617715; PMCID: PMC11813341

Lai WT, Deng WF, Xu SX, Zhao J, Xu D, Liu YH, Guo YY, Wang MB, He FS, Ye SW, Yang QF, Liu TB, Zhang YL, Wang S, Li MZ, Yang YJ, Xie XH, Rong H. Shotgun metagenomics reveals both taxonomic and tryptophan pathway differences of gut microbiota in major depressive disorder patients. Psychol Med. 2021 Jan;51(1):90-101. https://doi.org/10.1017/S0033291719003027 Epub 2019 Nov 5. PMID: 31685046

Chen VC, Wu SI. An exploratory analysis on the association between suicidal ideation and the microbiome in patients with or without major depressive disorder. J Affect Disord. 2025 Feb 1;370:362-372. https://doi.org/10.1016/j.jad.2024.10.120 Epub 2024 Oct 29. PMID: 39481689

Liu Y, Zhang L, Wang X, Wang Z, Zhang J, Jiang R, Wang X, Wang K, Liu Z, Xia Z, Xu Z, Nie Y, Lv X, Wu X, Zhu H, Duan L. Similar Fecal Microbiota Signatures in Patients With Diarrhea-Predominant Irritable Bowel Syndrome and Patients With Depression. Clin Gastroenterol Hepatol. 2016 Nov;14(11):1602-1611.e5. https://doi.org/10.1016/j.cgh.2016.05.033 Epub 2016 Jun 4. PMID: 27266978.

Sim CP, Wee J, Xu Y, Cheung YB, Soong YL, Manton DJ. Anti-caries effect of CPP-ACP in irradiated nasopharyngeal carcinoma patients. Clin Oral Investig. 2015 Jun;19(5):1005-11. https://doi.org/10.1007/s00784-014-1318-y Epub 2014 Sep 27. PMID: 25261399

Lee H, Lee MH, Seo SH, Pak J, Bae S, Lee G, Kim HS, Kim K, Kim JH, Son HS. Integrated Microbiome and Metabolomic Profiling to Identify Potential Biomarkers of Major Depressive Disorder. J Microbiol Biotechnol. 2026 Jan 22;36:e2512014. https://doi.org/10.4014/jmb.2512.12014 PMID: 41605799; PMCID: PMC12868950

Liu P, Gao M, Liu Z, Zhang Y, Tu H, Lei L, Wu P, Zhang A, Yang C, Li G, Sun N, Zhang K. Gut Microbiome Composition Linked to Inflammatory Factors and Cognitive Functions in First-Episode, Drug-Naive Major Depressive Disorder Patients. Front Neurosci. 2022 Jan 28;15:800764. https://doi.org/10.3389/fnins.2021.800764 PMID: 35153660; PMCID: PMC8831735

Lin SK, Chen HC, Chen IM, Hsu CD, Huang MC, Liu CM, Wu SI, Chen PY, Chen CH, Kuo PH. Dysbiosis and depression: A study of gut microbiota alterations and functional pathways in antidepressant-naïve mood disorder patients. Transl Psychiatry. 2025 Aug 18;15(1):290.https://doi.org/10.1038/s41398-025-03521-1 PMID: 40825932; PMCID: PMC12361489

Hashimoto K. Gut-microbiota-brain axis by bile acids in depression. Psychiatry Clin Neurosci. 2022 Jul;76(7):281. https://doi.org/10.1111/pcn.13370 PMID: 35778785.

Wang Y, Wang L, Zheng Y, Wang R, Zhen F, Cheng ZJ, Sun B, Tsui SK, An C. Integrated multi-omics analysis of gut microbiome and serum metabolome in unipolar and bipolar depression. Eur Arch Psychiatry Clin Neurosci. 2026 Mar 26.https://doi.org/10.1007/s00406-026-02212-2 Epub ahead of print. PMID: 41882388

Sun N, Zhang J, Wang J, Liu Z, Wang X, Kang P, Yang C, Liu P, Zhang K. Abnormal gut microbiota and bile acids in patients with first-episode major depressive disorder and correlation analysis. Psychiatry Clin Neurosci. 2022 Jul;76(7):321-328. https://doi.org/10.1111/pcn.13368 Epub 2022 May 23. PMID: 35445772

Simpson CA, Schwartz OS, Eliby D, Butler CA, Huang K, O'Brien-Simpson N, Callaghan BL, Dashper SG, Gooley PR, Whittle S, Haslam N, Simmons JG. Bugs and Brains, the Gut and Mental Health Study: a mixed-methods study investigating microbiota composition and function in anxiety, depression and irritable bowel syndrome. BMJ Open. 2021 Mar 15;11(3):e043221. https://doi.org/10.1136/bmjopen-2020-043221 PMID: 33722869; PMCID: PMC7970253

Maes M, Vasupanrajit A, Jirakran K, Klomkliew P, Chanchaem P, Tunvirachaisakul C, Payungporn S. Exploration of the Gut Microbiome in Thai Patients with Major Depressive Disorder Shows a Specific Bacterial Profile with Depletion of the RuminococcusGenus as a Putative Biomarker. Cells. 2023 Apr 25;12(9):1240. https://doi.org/10.3390/cells12091240 PMID: 37174640; PMCID: PMC10177051

Journal of Education, Health and Sport

Downloads

  • PDF

Published

2026-09-25

How to Cite

1.
ŚWIATLAK, Kalina, ŻELAZNA, Wiktoria and TRZASKALIK, Justyna. Melancholy in the Microbiome: Decoding the Gut-Brain Axis in Major Depression – A Systematic Review. Journal of Education, Health and Sport. Online. 25 September 2026. Vol. 95. [Accessed 25 September 2026]. DOI 10.12775/JEHS.2026.95.74083.
  • ISO 690
  • ACM
  • ACS
  • APA
  • ABNT
  • Chicago
  • Harvard
  • IEEE
  • MLA
  • Turabian
  • Vancouver
Download Citation
  • Endnote/Zotero/Mendeley (RIS)
  • BibTeX

Issue

Vol. 95 (2026)

Section

Medical Sciences

License

Copyright (c) 2026 Kalina Światlak, Wiktoria Żelazna, Justyna Trzaskalik

Creative Commons License

This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.

The periodical offers access to content in the Open Access system under the Creative Commons Attribution-NonCommercial-ShareAlike 4.0

Stats

Number of views and downloads: 3
Number of citations: 0

Search

Search

Browse

  • Issue archive

User

User

Current Issue

  • Atom logo
  • RSS2 logo
  • RSS1 logo

Information

  • For Readers
  • For Authors
  • For Librarians

Newsletter

Subscribe Unsubscribe

Tags

Search using one of provided tags:

Major Depressive Disorder, Microbiota-Gut-Brain Axis, Tryptophan-Kynurenine Pathway, Dysbiosis, Neuroinflammation
Up

Akademicka Platforma Czasopism

Najlepsze czasopisma naukowe i akademickie w jednym miejscu

apcz.umk.pl

Partners

  • Akademia Ignatianum w Krakowie
  • Akademickie Towarzystwo Andragogiczne
  • Fundacja Copernicus na rzecz Rozwoju Badań Naukowych
  • Instytut Historii im. Tadeusza Manteuffla Polskiej Akademii Nauk
  • Instytut Kultur Śródziemnomorskich i Orientalnych PAN
  • Instytut Tomistyczny
  • Karmelitański Instytut Duchowości w Krakowie
  • Ministerstwo Kultury i Dziedzictwa Narodowego
  • Państwowa Akademia Nauk Stosowanych w Krośnie
  • Państwowa Akademia Nauk Stosowanych we Włocławku
  • Państwowa Wyższa Szkoła Zawodowa im. Stanisława Pigonia w Krośnie
  • Polska Fundacja Przemysłu Kosmicznego
  • Polskie Towarzystwo Ekonomiczne
  • Polskie Towarzystwo Ludoznawcze
  • Towarzystwo Miłośników Torunia
  • Towarzystwo Naukowe w Toruniu
  • Uniwersytet im. Adama Mickiewicza w Poznaniu
  • Uniwersytet Komisji Edukacji Narodowej w Krakowie
  • Uniwersytet Mikołaja Kopernika
  • Uniwersytet w Białymstoku
  • Uniwersytet Warszawski
  • Wojewódzka Biblioteka Publiczna - Książnica Kopernikańska
  • Wyższe Seminarium Duchowne w Pelplinie / Wydawnictwo Diecezjalne „Bernardinum" w Pelplinie

© 2021- Nicolaus Copernicus University Accessibility statement Shop