Optimal Conditions for the Determination of Tryptophan and Its Metabolites Using Various Chromatographic Techniques: A New Perspective
DOI:
https://doi.org/10.12775/QS.2026.78.76514Keywords
tryptophan, kynurenine, serotonin, indole metabolites, HPLC, UHPLC-MS/MS, LC-MS, chromatographic method validation, metabolomicsAbstract
Background. Tryptophan (Trp) is an essential amino acid whose metabolism is distributed among the kynurenine, serotonin and microbiota-derived indole pathways. Their products differ markedly in polarity, stability, abundance and ionization, which makes simultaneous chromatographic determination difficult.
Aim. The aim of this review is to critically compare chromatographic strategies for the determination of Trp and its metabolites and to formulate an updated analytical framework for method selection and validation.
Material and methods. PubMed-indexed literature was reviewed with emphasis on recent analytical papers, systematic reviews and studies describing HPLC, UHPLC, LC-MS, LC-MS/MS and high-resolution MS workflows. Polish contributions were specifically considered, including work from Medical University of Lublin groups.
Results. The literature demonstrates a transition from conventional HPLC-UV/fluorescence toward targeted LC-MS/MS and high-resolution metabolomics. Recent methods improve multiplexing, sensitivity and matrix tolerance, but methodological heterogeneity remains substantial. The newest direction is chromatographic optimization based on chemical diversity rather than the assumption that a single C18 phase is universally optimal.
Conclusions. An optimal method should be selected according to the intended analyte panel, biological matrix and quantitative purpose. Biphenyl, mixed-mode or carefully optimized reversed-phase systems, isotope-labelled internal standards, matrix-matched calibration and explicit validation of recovery, matrix effects and stability provide a strong contemporary framework.
References
Xia, H. H., & Huang, J. Z. (2026). Tryptophan metabolism at the crossroads of the neuro-immuno-microbial axis: Implications for precision medicine in chronic diseases. Frontiers in Cellular and Infection Microbiology, 15, 1707850. https://doi.org/10.3389/fcimb.2025.1707850
Gao, K., Mu, C., Farzi, A., & Zhu, W. Y. (2020). Tryptophan metabolism: A link between the gut microbiota and brain. Advances in Nutrition, 11(3), 709-723.
https://doi.org/10.1093/advances/nmz127
Pei, T., Li, W., Zhou, Z., et al. (2025). The relationship between tryptophan metabolism and gut microbiota: Interaction mechanism and potential effects in infection treatment. Microbiological Research, 298, 128211. https://doi.org/10.1016/j.micres.2025.128211
Stone, T. W., & Williams, R. O. (2024). Tryptophan metabolism as a 'reflex' feature of neuroimmune communication: Sensor and effector functions for the indoleamine-2,3-dioxygenase kynurenine pathway. Journal of Neurochemistry, 168(9), 3333-3357.
https://doi.org/10.1111/jnc.16015
Hossen, M. M., Fleiss, B., & Zakaria, R. (2025). The current state in liquid chromatography-mass spectrometry methods for quantifying kynurenine pathway metabolites in biological samples: A systematic review. Critical Reviews in Clinical Laboratory Sciences, 62(6), 437-453.
https://doi.org/10.1080/10408363.2025.2495160
Dai, Z., Coad, J., et al. (2019). Analysis of tryptophan and its metabolites by high-performance liquid chromatography. Methods in Molecular Biology, 2030, 131-142.
https://doi.org/10.1007/978-1-4939-9639-1_11
Zhen, Q., Huang, X., Zhang, X., Ban, Y., & Ding, M. (2011). Simultaneous determination of tryptophan and its key metabolites by high performance liquid chromatography with programmed wavelength ultraviolet detection. Journal of Chromatographic Science, 49(5), 435-438. https://doi.org/10.3724/SP.J.1123.2011.00435
Yamada, K., Miyazaki, T., Shibata, T., Hara, N., & Tsuchiya, M. (2008). Simultaneous measurement of tryptophan and related compounds by liquid chromatography/electrospray ionization tandem mass spectrometry. Journal of Chromatography B, 867(1), 57-61.
https://doi.org/10.1016/j.jchromb.2008.03.010
Presits, P., & Molnar-Perl, I. (2003). HPLC of tryptophan and its metabolites: As OPA derivatives and on the basis of their UV and fluorescence spectra, simultaneously. Advances in Experimental Medicine and Biology, 527, 695-704. https://doi.org/10.1007/978-1-4615-0135-0_82
Desmons, A., Humbert, L., Eguether, T., et al. (2022). High performance liquid chromatography-tandem mass spectrometry quantification of tryptophan metabolites in human serum and stool - Application to clinical cohorts in inflammatory bowel diseases. Journal of Chromatography A, 1685, 463602. https://doi.org/10.1016/j.chroma.2022.463602
Guo, H., Zhang, L., Li, X., et al. (2017). Twins labeling-liquid chromatography/mass spectrometry based metabolomics for absolute quantification of tryptophan and its key metabolites. Journal of Chromatography A, 1504, 10-19. https://doi.org/10.1016/j.chroma.2017.05.008
Rubio, V. Y., Cagmat, J. G., Wang, G. P., Yost, R. A., & Garrett, T. J. (2020). Analysis of tryptophan metabolites in serum using wide-isolation strategies for UHPLC-HRMS/MS. Analytical Chemistry, 92(3), 2550-2557. https://doi.org/10.1021/acs.analchem.9b04210
Fröbel, D., Stanke, D., Langner, M., et al. (2023). Liquid chromatography-tandem mass spectrometry based simultaneous quantification of tryptophan, serotonin and kynurenine pathway metabolites in tissues and cell culture systems. Journal of Chromatography B, 1229, 123870.
https://doi.org/10.1016/j.jchromb.2023.123870
van Zundert, S. K. M., Griffioen, P. H., van Rossem, L., et al. (2023). Simultaneous quantification of tryptophan metabolites by liquid chromatography tandem mass spectrometry during early human pregnancy. Clinical Chemistry and Laboratory Medicine, 61(3), 442-451.
https://doi.org/10.1515/cclm-2022-0790
Dai, M., Wang, Q., Kou, S., et al. (2022). A sensitive UPLC-MS/MS method for the simultaneous determination of the metabolites in the tryptophan pathway in rat plasma. Journal of Pharmaceutical and Biomedical Analysis, 219, 114979.
https://doi.org/10.1016/j.jpba.2022.114979
Sadok, I., Gamian, A., & Staniszewska, M. M. (2017). Chromatographic analysis of tryptophan metabolites. Journal of Separation Science, 40(15), 3020-3045.
https://doi.org/10.1002/jssc.201700184
Wicha-Komsta, K., Skibiński, R., Kocki, T., Turski, W. A., & Komsta, Ł. (2021). HPLC gradient retention of tryptophan and its metabolites on three stationary phases in context of lipophilicity assessment. Journal of Chromatographic Science, 59(1), 40-46.
https://doi.org/10.1093/chromsci/bmaa074
Zakrocka, I., Mlak, R., Moniczewska, N., et al. (2026). Tryptophan metabolites clearance in hemodialyzed patients. Amino Acids, 58(1), 12. https://doi.org/10.1007/s00726-026-03499-0
Agus, A., Clément, K., & Sokol, H. (2021). Gut microbiota-derived metabolites as central regulators in metabolic disorders. Gut, 70, 1174-1182. https://doi.org/10.1136/gutjnl-2020-323071
Bauermeister, A., Mannochio-Russo, H., Costa-Lotufo, L. V., Jarmusch, A. K., & Dorrestein, P. C. (2022). Mass spectrometry-based metabolomics in microbiome investigations. Nature Reviews Microbiology, 20(3), 143-160. https://doi.org/10.1038/s41579-021-00621-9
Eggertsen, P. P., Hansen, J., Andersen, M. L., Nielsen, J. F., Olsen, R. K. J., & Palmfeldt, J. (2023). Simultaneous measurement of kynurenine metabolites and explorative metabolomics using liquid chromatography-mass spectrometry: A novel accurate method applied to serum and plasma samples from a large healthy cohort. Journal of Pharmaceutical and Biomedical Analysis, 227, 115304. https://doi.org/10.1016/j.jpba.2023.115304
Neely, M. D., Schmidt, D. E., & Deutch, A. Y. (2007). Cortical regulation of dopamine depletion-induced dendritic spine loss in striatal medium spiny neurons. Neuroscience, 149(2), 457-464.
https://doi.org/10.1016/j.neuroscience.2007.06.044
Ultra-performance liquid chromatography-tandem mass spectrometry quantitative profiling of tryptophan metabolites in human plasma and its application to clinical study. (2019). Journal of Chromatography B. 121745. https://doi.org/10.1016/j.jchromb.2019.121745
Tkachenko, K., Laroni, A., Ponassi, M., et al. (2026). Chromatographic resolution and reliable quantification of eleven endogenous and microbiota-derived tryptophan metabolites in human plasma by HPLC-MS/MS. Journal of Chromatography A, 1779, 467035.
https://doi.org/10.1016/j.chroma.2026.467035
Plasma tryptophan, kynurenine and 3-hydroxykynurenine measurement using automated on-line solid-phase extraction HPLC-tandem mass spectrometry. (2009). Journal of Chromatography B.
https://doi.org/10.1016/j.jchromb.2009.01.015
Song, M., Sheng, X., Ye, G., et al. (2022). Selective enrichment of microbiota-derived tryptophan metabolites in mouse faeces based on molecularly imprinted solid-phase extraction for HPLC analysis. Journal of Pharmaceutical and Biomedical Analysis, 212, 114641.
https://doi.org/10.1016/j.jpba.2022.114641
Vitalini, S., Dei Cas, M., Rubino, F. M., et al. (2020). LC-MS/MS-based profiling of tryptophan-related metabolites in healthy plant foods. Molecules, 25(2), 311.
https://doi.org/10.3390/molecules25020311
Jankech, T., Gerhardtova, I., Majerova, P., et al. (2024). A novel RP-UHPLC-MS/MS approach for the determination of tryptophan metabolites derivatized with 2-bromo-4'-nitroacetophenone.
Biomedicines, 12(5), 1003. https://doi.org/10.3390/biomedicines12051003
Eggertsen, P. P., Hansen, J., Andersen, M. L., Nielsen, J. F., Olsen, R. K. J., & Palmfeldt, J. (2023). Simultaneous measurement of kynurenine metabolites and explorative metabolomics using liquid chromatography-mass spectrometry: A novel accurate method applied to serum and plasma samples from a large healthy cohort. Journal of Pharmaceutical and Biomedical Analysis, 227, 115304. https://doi.org/10.1016/j.jpba.2023.115304
Flieger, J., Święch-Zubilewicz, A., Śniegocki, T., Dolar-Szczasny, J., & Pizoń, M. (2018). Determination of tryptophan and its major metabolites in fluid from the anterior chamber of the eye in diabetic patients with cataract by liquid chromatography mass spectrometry (LC-MS/MS). Molecules, 23(11), 3012. https://doi.org/10.3390/molecules23113012
Fröbel, D., Stanke, D., Langner, M., et al. (2023). Liquid chromatography-tandem mass spectrometry based simultaneous quantification of tryptophan, serotonin and kynurenine pathway metabolites in tissues and cell culture systems. Journal of Chromatography B, 1229, 123870.
https://doi.org/10.1016/j.jchromb.2023.123870
van Zundert, S. K. M., Griffioen, P. H., van Rossem, L., et al. (2023). Simultaneous quantification of tryptophan metabolites by LC-MS/MS during early human pregnancy. Clinical Chemistry and Laboratory Medicine, 61(3), 442-451. https://doi.org/10.1515/cclm-2022-0790
Wu, P., et al. (2024). A rapid and reliable targeted LC-MS/MS method for quantitative analysis of the tryptophan-NAD metabolic network disturbances in tissues and blood of sleep deprivation mice. Analytica Chimica Acta. 343125. https://doi.org/10.1016/j.aca.2024.343125
Lesniak, W. G., Jyoti, A., Mishra, M. K., Louissaint, N., Romero, R., Chugani, D. C., Kannan, S., & Kannan, R. M. (2013). Concurrent quantification of tryptophan and its major metabolites. Analytical Biochemistry, 443(2), 222-231.
https://doi.org/10.1016/j.ab.2013.09.001
Widder, J., Herbst, F., Dobrowsky, W., Schmid, R., Pokrajac, B., Jech, B., Chiari, C., Stift, A., Maier, A., Karner-Hanusch, J., Teleky, B., Wrba, F., Jakesz, R., & Poetter, R. (2005). Preoperative short-term radiation therapy (25 Gy, 2.5 Gy twice daily) for primary resectable rectal cancer (phase II). British Journal of Cancer, 92(7), 1209-1214. https://doi.org/10.1038/sj.bjc.6602485
Marklová, E., Makovičková, H., & Krákorová, I. (2000). Screening for defects in tryptophan metabolism. Journal of Chromatography A, 870(1-2), 289-293.
https://doi.org/10.1016/S0021-9673(99)00973-5
Fila, M., Chojnacki, J., Derwich, M., Chojnacki, C., Pawlowska, E., & Blasiak, J. (2025). Tryptophan metabolism in migraine: A review of experimental and clinical studies and a need to enhance research strategies. Reviews in the Neurosciences, 36(7), 701-715.
https://doi.org/10.1515/revneuro-2025-0008
Chen, W., Mao, T., Sun, C., Ma, R., Dong, Y., Xiong, Y., Bao, W., Han, R., & Wang, L. (2025). New insights into tryptophan metabolism in ischemic stroke: A promising therapeutic target. Brain Research Bulletin, 230, 111529. https://doi.org/10.1016/j.brainresbull.2025.111529
Luo, Z., Liu, Y., Wang, X., Fan, F., Yang, Z., & Luo, D. (2024). Exploring tryptophan metabolism: The transition from disturbed balance to diagnostic and therapeutic potential in metabolic diseases. Biochemical Pharmacology, 230(Pt 1), 116554.
https://doi.org/10.1016/j.bcp.2024.116554
Zhang, J., Zhou, Y., Mei, X., Yan, S., Mao, J., Li, Y., Bian, Z., Li, L., Ji, D., Lu, T., Chen, J., & Su, L. (2026). Molecular mechanisms and therapeutic potential of tryptophan metabolism in gut-brain signaling transduction: A narrative review. Journal of Neuroinflammation, 23(1), 131.
https://doi.org/10.1186/s12974-026-03763-w
Zhao, J., Bai, X., Du, J., Chen, Y., Guo, X., Zhang, J., Gan, J., Wu, P., Chen, S., Zhang, X., Yang, J., Jin, J., & Gao, L. (2025). Tryptophan metabolism: From physiological functions to key roles and therapeutic targets in cancer (Review). Oncology Reports, 54(1), 86.
https://doi.org/10.3892/or.2025.8919
Chen, Y., Chen, J., Guo, D., Yang, P., Chen, S., Zhao, C., Xu, C., Zhang, Q., Lin, C., Zhong, S., & Zhang, S. (2022). Tryptophan metabolites as biomarkers for esophageal cancer susceptibility, metastasis, and prognosis. Frontiers in Oncology, 12, 800291.
https://doi.org/10.3389/fonc.2022.800291
Liquid chromatography-mass spectrometry untargeted metabolomics reveals increased levels of tryptophan indole metabolites in urine of metabolic syndrome patients. (2020). European Journal of Mass Spectrometry, 26(6), 379-387. https://doi.org/10.1177/1469066720964632
Esperanza, M. G., Wrobel, K., Ojeda, A. G., Garay-Sevilla, M. E., Escobosa, A. R. C., Barrientos, E. Y., & Wrobel, K. (2020). Liquid chromatography-mass spectrometry untargeted metabolomics reveals increased levels of tryptophan indole metabolites in urine of metabolic syndrome patients. European Journal of Mass Spectrometry, 26(6), 379-387.
Downloads
Published
How to Cite
Issue
Section
License
Copyright (c) 2026 Marcel Likus, Alicja Gruna, Krzysztof Górecki, Maciej Kozłowski, Maria Lizner, Michał Pawlików, Natalia Kobylarz, Paulina Wyszkowska, Wiktor Marek, Katarzyna Szalacha

This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
Stats
Number of views and downloads: 72
Number of citations: 0